PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi07g03660.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family bHLH
Protein Properties Length: 271aa    MW: 29319.4 Da    PI: 7.607
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi07g03660.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.25.3e-1279125354
                      HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                      ++h+e+ErrRR+riN  +++Lr l+P+      +K++Ka+ L ++++ +k+L
  Vradi07g03660.1  79 KNHSEAERRRRERINGHLATLRGLVPST-----EKMDKATLLAEVIKQVKEL 125
                      58*************************8.....8************999887 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.41576125IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.6E-1079125IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.97E-1380129IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.6E-1380127IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.7E-1182131IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:3.30.70.2609.4E-4155222No hitNo description
CDDcd048730.00148160227No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    Send to blast
MVHSFYEKSS SSGSDISGLF NPTLQSVGAS SNGEVAKDGL SSAHSLVYES EKGELVKCSS  60
AARVGKNEIC EAKALAALKN HSEAERRRRE RINGHLATLR GLVPSTEKMD KATLLAEVIK  120
QVKELKKTAV EASKGFPIPM DADEVKVEPC DGLSMSYSAT ICCDFRPEII SDLRQTLDSL  180
PLHLEKAEIS TLAGRMKNVF VFTCCKENIN IDTEACQALA RTVHQALCSV LEKASASLEF  240
SPRTSHANKR RRLCFIETST SSCNHGSCSC *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18489ERRRRE
2248252KRRRL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150340.0AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014510279.10.0PREDICTED: putative transcription factor bHLH107
TrEMBLA0A0L9TNX70.0A0A0L9TNX7_PHAAN; Uncharacterized protein
TrEMBLA0A0S3R3140.0A0A0S3R314_PHAAN; Uncharacterized protein
STRINGGLYMA07G32690.11e-152(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF89863143
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40200.12e-34bHLH family protein